PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG023491t4
Common NameTCM_023491
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 332aa    MW: 37113.6 Da    PI: 9.4238
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG023491t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.9e-104586445
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                       k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Thecc1EG023491t4 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86
                      6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.3E-83789No hitNo description
SMARTSM003384.6E-942105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154488IPR004827Basic-leucine zipper domain
PfamPF001704.9E-74686IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.38E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141444.1E-32128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADASPRTDT STDDTDEKNQ RFERGQTNAI VASDSSDRSK DKTDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR  120
WLEEHNRQIN ELRAAVNSHA GDTELRTIVD NVTAHFDDIF RLKGIAAKAD VFHVLSGMWK  180
TPAERCFLWI GGFRSSELLK LLANQLEPLT EQQFMGIHNL QQSSQQAEDA LSQGMEALQQ  240
SLAETLTNGS PGPSGSSGNV ANYMGQMAMA MGKLGTLEGF VRQADNLRQQ TLQQMHRILT  300
TRQSARALLA INDYFSRLRA LSSLWLARPR E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028137.10.0Transcription factor HBP-1b(c1) isoform 3
RefseqXP_007028138.10.0Transcription factor HBP-1b(c1) isoform 3
RefseqXP_007028141.10.0Transcription factor HBP-1b(c1) isoform 3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A061EVG70.0A0A061EVG7_THECC; Transcription factor HBP-1b(C1) isoform 3
STRINGVIT_08s0007g05170.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-139bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]